OBJECTIVE: To study the effect of natural emulsifier acacia senegal on in vivo and in vitro performance of chlorogenic acid self-microemulsion. METHODS: Chlorogenic acid self-microemulsion containing acacia senegal (“new chlorogenic acid self-microemulsion”) was prepared by using acacia senegal to gradually replace polysorbate 80 in chlorogenic acid self-microemulsion containing nonionic emulsifier (“traditional chlorogenic acid self-microemulsion”). The appearance, morphology, particle size, conductivity, pH value, stability, in vitro release and intestinal absorption kinetics of the 2 kinds self-microemulsions were evaluated. RESULTS: 50% of polysorbate 80 was replaced by acacia senegal in new chlorogenic acid self-microemulsion. The traditional and new chlorogenic acid self-microemulsions had clear appearance, and approximately spherical drops. Particle sizes were (24.53±3.03), (35.51±5.91) nm; dectrical conductivities were (195.6±0.3), (189.5±0.4) μs/cm; and pH were 3.87±0.02, 4.08±0.03 (n=3), respectively. Compared with traditional chlorogenic acid self-microemulsion, the absorption rate constant, effective permeability coefficient and absorption amount of the new one in duodenum, jejunum, ileum were increased a little (P>0.05); the above indexes in colon were obviously decreased (P<0.05). CONCLUSIONS: The new chlorogenic acid self-microemulsion can maintain the performance of traditional one, and increase absorption of chlorogenic acid in small intestine.