OBJECTIVE: To investigate the effect of metformin on sex hormone level, insulin resistance and related indexes in women with polycystic ovarian syndrome (PCOS). METHODS: 79 PCOS women were collected as PCOS group, other 86 healthy women as control group. All patients received 0.85 g Metformin tablet, twice a day, for totally 6 months. Boby mass,BMI,waist circumference,hip circumference,ratio of waist to hip,glycated hemoglobin, T, DHEA-S, E2, LH, FSH, PRL, PROG, SHBG, FPG, FINS, LH/FSH, HOMA-IR and FAI before and after treatment in PCOS group were observed and compared with control group. RESULTS: During treatment, 2 patients made withdrawal because of pregnancy, 3 made withdrawal because of showing gastrointestinal side effects, 2 were lost to follow, totally 72 completed it. After treatment, body mass, BMI, waist circumference, hip circumference, glycated hemoglobin, FINS, HOMA-IR, T, LH, LH/FSH, PROG, FAI in PCOS group were significantly lower than before, SHBG was significantly higher than before, glycated hemoglobin and PROG were lower than control group, while waist circumference, FINS, HOMA-IR, LH/FSH and FAI were higher than control group, the differences were statistically significant (P<0.05). There was no significant difference in ratio of waist to hip, FPG, DHEA-S, E2, FSH and PRL before and after treatment (P>0.05). CONCLUSIONS: Metformin can effectively improve the sex hormone levels and insulin resistance of patients with PCOS.